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Error: Invalid alphabet type in target for nhmmer. #66

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theo-allnutt-bioinformatics opened this issue Jun 28, 2023 · 0 comments
Open

Error: Invalid alphabet type in target for nhmmer. #66

theo-allnutt-bioinformatics opened this issue Jun 28, 2023 · 0 comments

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@theo-allnutt-bioinformatics
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My fasta file is definitely valid, but get this error.

Command: nhmmer --cpu 12 -E 1e-06 --w_length 3878 -o /dev/null --tblout /dev/stdout '/g/data/nm31/bin/barrnap/bin/../db/euk.hmm' 'nothofagus_assembly.fasta'
[barrnap] ERROR: nhmmer failed to run - Error: Invalid alphabet type in target for nhmmer. Expect DNA or RNA.
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