Pinned Loading

1. Captus Captus Public

   Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

   Python 23 5

2. NanoAmp NanoAmp Public

   Species identification via Nanopore sequencing of barcoded amplicons

   Python 1

3. vcf2phylip vcf2phylip Public

   Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

   Python 297 86

4. sam2consensus sam2consensus Public

   Get the consensus sequences from SAM (and BAM) files, ignoring the reference

   Python 10 4

5. paralog-finder paralog-finder Public

   Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)

   Python 10 1

6. fineRADstructure-tools fineRADstructure-tools Public

   Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)

   Python 9 2