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Issues list

Evaluation dataset
#61 opened Dec 6, 2021 by anweiwei
Generate Attention Scores on dnalongcat finetuned models
#37 opened Jun 28, 2021 by mitchgill16
1
No module named 'dateutil'
#49 opened Aug 26, 2021 by ryao-mdanderson
2
running DNABERT pretrain.py file output environment error
#50 opened Aug 30, 2021 by alexwu66666
5
Pre-Training DNABERT
#51 opened Aug 30, 2021 by iamakshay1
Can't recreate your results
#53 opened Sep 11, 2021 by woreom
Need example of using compute_result.py
#54 opened Sep 12, 2021 by chen77526
Model name 'dna6' was not found in tokenizers model name list
#55 opened Sep 23, 2021 by BioSenior
7
How to compute the feature values for the last layer from DNA sequences?
#56 opened Sep 24, 2021 by raphaelmourad
Question about the splice sites prediction
#57 opened Oct 15, 2021 by AstroSign
1
fine-tuning datasets
#58 opened Oct 18, 2021 by fteufel
5
Customizing training data for fine-tuning the model
#59 opened Nov 5, 2021 by sumin5784
1
DnaPromProcessor Vs DnaPairProcessor
#29 opened May 8, 2021 by appledora
3
apply your model on plant gene input
#60 opened Nov 10, 2021 by alexwu66666
how to limit cpu usage
#62 opened Jan 12, 2022 by Jasonxu0109
1
processed datasets used in the paper
#63 opened Jan 13, 2022 by MengLiuPurdue
Adding additional information for a classification task
#64 opened Jan 19, 2022 by danarte
Error when loading pretrained model for finetunning from a checkpoint of the pretrained model
#65 opened Jan 25, 2022 by danarte
1
Sampling of Training Dataset via WeightedRandomSampler for Imbalanced Classes
#66 opened Jan 26, 2022 by mosala777
custom fine-tuning with DNABERT-XL
#67 opened Feb 7, 2022 by rosherbal
3
error
#69 opened Feb 23, 2022 by Moy4e
DNA BERT : MISMATCH in the saved fine_tuned model and the model loaded after fine tuning
#70 opened Mar 1, 2022 by FAhtisham
Long DNA seqs embeddings
#72 opened Mar 10, 2022 by rominaappierdo
Long training time and overfitting when reproducing your example
#73 opened Apr 2, 2022 by warm-ice0x00
1
Using DNABert to predict expression
#125 opened Sep 19, 2024 by saninta0212
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