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65 Open 48 Closed
65 Open 48 Closed
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Issues list

Using DNABert to predict expression
#125 opened Sep 19, 2024 by saninta0212
Understand the attention design
#124 opened Sep 17, 2024 by HelloWorldLTY
Which model to use for genomic variants analysis?
#122 opened Jul 16, 2024 by nc1m
1
Installation Issues.
#120 opened May 10, 2024 by CodelyUnicorn
what is the masking ratio
#119 opened May 8, 2024 by abhidipbhattacharyya
Release pretraining data?
#118 opened May 6, 2024 by leannmlindsey
1
Request for Detailed Information on Training the Tokenizer
#117 opened Mar 14, 2024 by a-green-hand-jack
1
the seq longer than 512
#113 opened Oct 7, 2023 by SSHH007
install packages using pip
#112 opened Oct 3, 2023 by lingfengxu
2
Shape of atten.npy
#111 opened Aug 25, 2023 by salehsereshkiucr
Pretraining error
#109 opened Jul 10, 2023 by liu3zhenlab
attention maps generated in pre-training stage or fine-turning stage
#108 opened Jul 6, 2023 by Shicheng-Guo
AssertionError in kmer2seq for motif search
#105 opened May 24, 2023 by Vejni
How to get the high attention regions of a given sequence.
#104 opened May 18, 2023 by ytye2010
Importing error of Transformers
#103 opened May 3, 2023 by Rofidagamal
4
There is a bug about attention mask in source code
#102 opened Apr 27, 2023 by Jason941
How can I create my own processor?
#101 opened Apr 26, 2023 by dominiclopez391
1
How Can I track model loss and accuracy of each epoch during fine-tuning, to make sure model is stable?
#99 opened Apr 13, 2023 by XuanrZhang
early_stop not being triggered?
#98 opened Apr 6, 2023 by jackievaleri
Changing max_seq_length does not update max_length in config.json
#97 opened Apr 4, 2023 by jackievaleri
How to divide our own dataset into test, dev and train data and assign them labels for fine tuning process
#96 opened Mar 8, 2023 by smruti241
2
provided example does not use GPU
#95 opened Feb 24, 2023 by ekg
1
Can you use the pre-trained BERT models, but add novel tokens to the vocabulary?
#94 opened Feb 14, 2023 by mepster
comparing DNABERT to where it was forked from transformers
#93 opened Feb 14, 2023 by mepster
Transformers not recognized in test run
#92 opened Jan 28, 2023 by leannmlindsey
ProTip! Updated in the last three days: updated:>2024-12-11.