RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

RNA-seq analysis pipeline for detection of gene-fusions

Precision HLA typing from next-generation sequencing data

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

gatk4 RNA variant calling pipeline

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

Master of Pores 2

Nascent Transcription Processing Pipeline

CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.

Precision HLA typing from next-generation sequencing data

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

FusionFlow is a bioinformatic pipeline that enables the detection of gene fusions from RNA and DNA data.

Hybkit-Ref: Up-to-date Genomic Sequence Reference Database for Hyb