An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.

R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

G4-iM Grinder is a fast, robust and highly adaptable algorithm. It is capable of locating, identifying, qualifying and quantifying DNA and RNA potential quadruplex structures, such as G-quadruplex, i-Motifs and their higher order versions.

The diversity of RNA structural elements and their documented role in human diseases make RNA an attractive therapeutic target. However, progress in drug discovery and development has been hindered by challenges in the determination of high-resolution RNA structures and a limited understanding of the parameters that drive RNA recognition by smal…

R package for the RNA Centric Annotation System (RCAS)

📦 Structstrings: implementation of Biostrings to work with dot bracket annotations

A workflow for eTAM-seq data processing.

Tracking the evolution of esophageal squamous cell carcinoma under dynamic immune selection by multi-omics sequencing

Microarray QC workflow mainly using the R package oligo

📦 RNAmodR: detection of post-transcriptional RNA modifications based on HTS data

Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data

Pre-processing pipeline for RNA crosslinking and High throughput sequencing data.

An R package to predict RNA structure thermodynamically using sliding windows approach

Tools for extracting structural information from NMR chemical shift data

📦 RNAmodR.AlkAnilineSeq: detection of m7G, m3C and D modification by AlkAnilineSeq

Characterization of small RNA pathways

📦 RNAmodR.RiboMethSeq: detection of 2'-O methylations by RiboMethSeq

📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.

Cleans spectrophotometry data from the Denovix DS-X